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Resetting Folder Permissions Invokes UAC Prompts

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I have a Windows 2008 R2 server, which had a shared folder with messy permissions.  I wanted to simplify these permissions, so I set them at the top level to Administrators:Full, System: Full, Creator/Owner: (Subfolders and Files only) Full, <DepartmentADGroup>: Modify, and chose the option to replace permissions all the way down the tree, which was desired in this particular case.

After the permissions had been set, I began to be forced to elevate in order to access the data.  I know that this Explorer/UAC issue often elicits complaints, but I am just wondering what exactly it is that makes some directories behave this way and not others.  This is not a system folder.  It is a user-created data folder.  Why did it suddenly change after I reset the permissions?  I don't mind this on system type folders, but it's disconcerting when you think you may have cut off access to user data.  I know better, but there are other much less experienced Admins who will be doing work on this server and may panic when they come across this.

Here is a little more information in case it's relevant:  I had just migrated the data from a Windows 2003 file server.  The migration method was to move the SAN disk from the old server to the new one, then importing the foreign disks (which formed a spanned volume) using Disk Management.

If someone can explain why resetting the permissions would make a user directory subject to UAC, I would be grateful.  I know the workarounds once this happens, I just don't understand the inconsistencies across directories. 

Thanks.


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